I am currently attempting to incorporate a program that I wrote into galaxy. I've found a few similar questions, but none of them seem to address this issue specifically.
This program makes several sub-directories for intermediate and output files. I'm pretty sure I have the inputs all figured out, but I'm a little confused about the output. In particular, it is possible to make each directory available for download? The intermediate files are still useful, which is why I don't have the program delete them in the first place. If not, is it possible to make only the final directory available?
Thank you for any help.