Question: Error- SAM to BAM tool in Galaxy local instance
0
gravatar for braveen.joseph
18 months ago by
braveen.joseph20 wrote:

Hello there,

I'm trying to implement the SAM-TO-BAM version 1.1.4 tool in Galaxy local instance. I got the following error.

Traceback (most recent call last): File "/Users/Salmo08/galaxy/lib/galaxy/jobs/runners/local.py", line 128, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) File "/Users/Salmo08/galaxy/lib/galaxy/jobs/__init__.py", line 1265, in finish dataset.datatype.set_meta( dataset, overwrite=False ) File "/Users/Salmo08/galaxy/lib/galaxy/datatypes/binary.py", line 347, in set_meta exit_code = subprocess.call( args=command, stderr=open( stderr_name, 'wb' ) ) File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 523, in call return Popen(popenargs, *kwargs).wait() File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 711, in __init__ errread, errwrite) File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 1343, in _execute_child raise child_exception OSError: [Errno 2] No such file or directory

Tool execution generated the following error message: Unable to finish job

I tried other versions as well. I'm getting the same error. Does anyone know what the issue is?. Thanks in advance.

galaxy sam-to-bam • 438 views
ADD COMMENTlink written 18 months ago by braveen.joseph20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 89 users visited in the last hour