Question: Unified Genotyper ERROR (Deprecated tool at Galaxy Main
gravatar for braveen.joseph
12 months ago by
braveen.joseph20 wrote:

Hi, I got the following error using running cloudmap workflow. This Error occurs when I Unified genotyper. Anyone knows why?

Picked up _JAVA_OPTIONS: -Xmx15872m -Xms256m [Thu Dec 01 21:54:47 CST 2016] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/galaxy-repl/main/scratch/tmp-gatk-khhgdF/gatk_input.fasta OUTPUT=/galaxy-repl/mai


ADD COMMENTlink modified 12 months ago by Jennifer Hillman Jackson23k • written 12 months ago by braveen.joseph20
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson23k wrote:


All GATK tools at and are older versions and have been deprecated.

This means that any may present problems that will not be corrected.

Alternatives for variant analysis can be found in our tutorials here:

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 8 weeks ago • written 12 months ago by Jennifer Hillman Jackson23k
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