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• Bowtie indexing error (local Galaxy)
  I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowti...
• Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator.
  Hi, I am trying to run topHat and I got it working for some files but the last one failed with th...
• Tophat2 tool error
  Hello, I was running Tophat2 on a 14 GB groomed fastq file. Local setup, 8 GB RAM, default Topha...
• Unable to finish job for both RNA-STAR and tophat2
  This is the problem I keep running into with both Tophat and RNA-Star on my locally installed Gal...
• Error: "Samtools not found" on a local Galaxy when running other jobs
  I attempted to run a job using HISAT2 on galaxy and in the console it shows samtools not found, h...
• Error running tophat2
  I have a local galaxy server that is encountering some strange issues. Previously, tophat2 was ru...
• Unable to run this job due to a cluster error, please retry it later
  i have tried several times to do a job but in history the job was failed. and this message appear...
• Error While Submitting A Job To Sge Queue
  Hi All, I have encountered this strange problem while submitting a job to an sge queue. I have u...
• Error- SAM to BAM tool in Galaxy local instance
  Hello there, I'm trying to implement the SAM-TO-BAM version 1.1.4 tool in Galaxy local instance....
• Attribute error when running some tools after updating to galaxy 17.05
  Dear Galaxy Community, I recently update my cluster-oriented local instance of Galaxy from versi...
• RNA STAR unable to finish job
  I encountered this error message while I was trying to run RNA STAR 2.4.0 (owner:iuc, revision: a...
• Tophat2 Not Working?
  Hello, I've been trying tophat 2 on the public server since last week but I don't get any results...
• Can't import or generate ref Flat
  Hi, We are running a local galaxy instance and I am having trouble important or grabbing a refFl...
• Error Setting BAM Metadata
  Hello All,   I am running a Galaxy instance on Linux and have installed tools from the Galaxy M...
• Unable to run job due to a misconfiguration
  I have tried running the job multiple times, but every time it comes up with the same error messa...
• Unable to finish job
  Hi there,  I've been running the local galaxy on a vm, when I try to run markduplicates and AddO...
• "Unable to finish job" when using discover_datasets in XML
  I was wondering if you could help with a problem I was having using the discover_datasets option...
• Error message in Tophat
  I am receiving the message "an error occurred setting the metadata for this dataset" on all jobs ...
• "Unable to finish job" but no errors, data seems to be there?
  Hi, I am running a local instance of galaxy on a dual-xeon chip MB with 128 GB of ram. I instal...
• Problems with Galaxy histories
  Hy everyone, I have some problems with Galaxy histories. I launched my histories last friday and ...