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Question: unable to run tophat on trim galore processed reads
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gravatar for computationalvarun
2.0 years ago by
computationalvarun • 20
computationalvarun • 20 wrote:

dear sir i have run tophat on reads trimmed by trim galore with reference to hg19. i am getting red colored error. i have tried it many times. i ahve downloaded the genome from ucsc browser as well. i ghave trimmed the reads with trim galore using 5' AGTCCGACGATC nad 3' ATCTCGTATGCC adapters. please help. i am stuck. thanks in advance
tophat mapping trimgalore • 675 views
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modified 2.0 years ago by nishashoolini.phd • 0 • written 2.0 years ago by computationalvarun • 20
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gravatar for Jennifer Hillman Jackson
2.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The Galaxy Main server at http://usegalaxy.org is down for maintenance today. Jobs may have been terminated before that started, as a preparation step. We expect the server to be back up around 5pm EST.

Please try again then and if the problems continue, send in a bug report from the error dataset. Please leave all inputs and output undeleted and include a link to this biostars post in the comments. https://wiki.galaxyproject.org/Support#Reporting_tool_errors

Best, Jen, Galaxy team
ADD COMMENT • link written 2.0 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for nishashoolini.phd
2.0 years ago by
nishashoolini.phd • 0
nishashoolini.phd • 0 wrote:

thanks jen i am trying again

ADD COMMENT • link written 2.0 years ago by nishashoolini.phd • 0
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