Question: Alignment summary for HISAT?
0
gravatar for annen
12 months ago by
annen0
annen0 wrote:

Hi,

I'm using HISAT to do my alignment. According to the documentation, when you run HISAT outside of Galaxy:

"When HISAT finishes running, it prints messages summarizing what happened. These messages are printed to the "standard error" ("stderr") filehandle."

Is there anyway to access this within Galaxy? Did I miss it somewhere in the settings?

Thanks!

stderr tool hisat report dataset • 512 views
ADD COMMENTlink modified 12 months ago • written 12 months ago by annen0
0
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Locate this stderr message by clicking first on the "i" View Details icon on the HISAT2 output dataset. On the resulting tool report page displayed the middle panel, a link to stderr is available.

Hope this helps! Jen, Galaxy team

ADD COMMENTlink written 12 months ago by Jennifer Hillman Jackson23k
0
gravatar for annen
12 months ago by
annen0
annen0 wrote:

Yes, thank you so much!

ADD COMMENTlink written 12 months ago by annen0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 117 users visited in the last hour