Question: Alignment summary for HISAT?
0
gravatar for annen
2.0 years ago by
annen0
annen0 wrote:

Hi,

I'm using HISAT to do my alignment. According to the documentation, when you run HISAT outside of Galaxy:

"When HISAT finishes running, it prints messages summarizing what happened. These messages are printed to the "standard error" ("stderr") filehandle."

Is there anyway to access this within Galaxy? Did I miss it somewhere in the settings?

Thanks!

stderr tool hisat report dataset • 1.2k views
ADD COMMENTlink modified 2.0 years ago • written 2.0 years ago by annen0
0
gravatar for Jennifer Hillman Jackson
2.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Locate this stderr message by clicking first on the "i" View Details icon on the HISAT2 output dataset. On the resulting tool report page displayed the middle panel, a link to stderr is available.

Hope this helps! Jen, Galaxy team

ADD COMMENTlink written 2.0 years ago by Jennifer Hillman Jackson25k
0
gravatar for annen
2.0 years ago by
annen0
annen0 wrote:

Yes, thank you so much!

ADD COMMENTlink written 2.0 years ago by annen0
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