Question: How to get / create GFF files for Cufflinks for Zebra Finch genome (taeGut2) on Galaxy ?
2.1 years ago by
chaoyuan • 80
chaoyuan • 80 wrote:
I'm trying to perform Cufflink on my local instance of Galaxy. I've installed taeGut2 genome from UCSC. I'm having trouble with the GFF files needed for Cufflink, though. I know that I can create a GFF file using the UCSC table browser. However, there are numerous options and I'm very confused about how to get the correct format. Could anyone tell me how to generate a correct GFF file to be used with Cufflink ?
ADD COMMENT • link •modified 2.1 years ago by Mo Heydarian ♦ 830 • written 2.1 years ago by chaoyuan • 80