Question: Tool Error "No space left on device"
gravatar for Diana Afonso
2.1 years ago by
Diana Afonso10
Diana Afonso10 wrote:


I am using FASTQ Groomer to convert my FASTQ files into one that contains Sanger-scaled quality values with ASCII offset 33 and the following error has been happening repeatedly. Since I am new at this I have no idea why this has been happening. Do you have any suggestions on how to solve this problem?

Traceback (most recent call last): File "/cvmfs/", line 175, in prepare_job modify_command_for_container=modify_command_for_container File "/cvmfs/", line 207, in build_command_line container=container File "/cvmfs/", line 67, in build_command externalized_commands = __externalize_commands(job_wrapper, external_command_shell, commands_builder, remote_command_params) File "/cvmfs/", line 123, in __externalize_commands write_script(local_container_script, script_contents, config) File "/cvmfs/", line 106, in write_script f.write(contents) IOError: [Errno 28] No space left on device

Thank you in advance.

ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson25k • written 2.1 years ago by Diana Afonso10


It's probably an issue on their end, alot of tools have been outputting the same error recently.


ADD REPLYlink written 2.1 years ago by VY120
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This was a problem server-side. Please try this and other failed operation again now. Sorry for the inconvenience.

Jen, Galaxy team

ADD COMMENTlink written 2.1 years ago by Jennifer Hillman Jackson25k
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