So this summer I ran a bioinformatics workflow on differential gene expression in three samples in galaxy (shown below) and now I want to use R to get publishable figures. If I have the DESeq2 results output, is there a way to view and manipulate these tabular files on R and create graphs/figures (eg. heat maps). Or does anyone have a program they could recommend that would could also produce publishable figures from my DESeq2 output?
Galaxy: FastQC FastQGroomer FastQ Quality Trim Trim Galore! TopHat BAM to SAM Ht-seq count DESeq2