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• can not visualization
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• Questions On Cuffdiff Output And Browser Visualization
  I would really appreciate someone's input on some issues I am having with my cuffdiff output for ...
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  I am following the NGS101-16 video on Cuffdiff/Cummerbund to learn how to use Cummerbund. For ex...
• Is There Web-Based Cummerbund?
  Dear All, I am going to visualize Cuffdiff outputs. I understand that CummeRbund can be used to ...
• Creating Heatmap from RNA-seq
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• Visualizing CuffDiff Data
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• Cuffdiff-output file gene differential expression-Degust
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• Question On Galaxy Data Visualization
  Dear galaxy group, I have question on the data visualization from output of galaxy pipeline. I...
• Unable To Visualize The Tophat Accepted Hits By Trackster Tool
  Hello, My name is Pinkuan, and I have been analyzing some RNA-seq data these days, but I confront...
• CUFFDIFF SCRIPT path
  I am trying to do RNA seq data analysis I encounter a error in the cuffdiff step stating No versi...
• Track visualization tool
  Hello, I haven't been able to visualize my ChIP-Seq peaks using track visualization tools. Previo...
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  Hi all, ![enter image description here][1]Am I missing plugin to visualize the data [1]: ht...
• Visualization of tree.shared data
  Hello, I generated several trees using "tree.shared" command. But now I am having difficulties w...
• Genome Browser Histogram Visualization Of Accepted Hits
  Hello, I am attempting to run accepted hit data from Tophat output into the UCSC Genome Web Brow...
• Problem in visualizing tracks in trackster
  I cannot visualize new tracks on trackster. I can see that the tracks get added on for visualizat...
• Problem With Cuffdiff
  Hy guys, I am performing some RNA sequencing. I am using a gtf file as a reference annotation for...
• Analyzing CuffDiff output
  Hi All,   I'm a grad student at the University of Alabama at Birmingham using galaxy for the fi...
• How to visualize mapping statistics
  Hello, after I perform Bowtie alignment how do I visualize mapping statistics?
• Galaxy Cuffdiff output doesnt correspont the output from manual
  Hi people! I was trying to run the local version of cummeRbund but the files that I get from the ...
• Cuffdiff crashed if I try to use option "Generate SQLite"
  I am running Cuffdiff on my data, It runs fine, but if I am adding option "Generate SQLite" it c...
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• Cuffdiff Output
  Hi, I have a question about interpreting the cuffdiff data and how to pick up significant genes. ...