Question: Adding Reference genome to STAR local galaxy
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gravatar for onspotproductions
2.1 years ago by
United States
onspotproductions40 wrote:

I am attempting to determine the best way to add a reference genome to STAR. Since there is no data manager and I would prefer not to have to use a fasta file for each run, what is the best method for adding the reference?

rna-seq mapping star galaxy • 736 views
ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson25k • written 2.1 years ago by onspotproductions40
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gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Create the indexes locally and edit the tool's associated "loc" file. The sample loc file with instructions is included in the tool's repository. For example (view is from the Tool Shed): RNASTAR Loc File Details

Hopefully this helps! Jen, Galaxy team

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Jennifer Hillman Jackson25k
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