Question: code behind and how galaxy reaches to our R Script/Python on clicking "Execute" button?
0
gravatar for Sara Mohammadi
19 months ago by
United States
Sara Mohammadi50 wrote:

Hello all,

I have a basic question about Galaxy. I need to know how to debug the galaxy code? I mean After creating the tool ( for that we put our R script (or any other...) alongside a wrapper file and also add our tool to tool_conf.xml file.) when we click on the "Execute" button our script run and executed and we can see the result. I need to know what is the on-click function and how to debug and trace the code from the time that we click on Execute button? (Iclient side and code behind of the code which run our R-script).

Thanks in advance, Bests,

Sara

galaxy • 696 views
ADD COMMENTlink modified 18 months ago by nitesh.turaga100 • written 19 months ago by Sara Mohammadi50
3
gravatar for Rob
18 months ago by
Rob50
France
Rob50 wrote:

Hi,

The best and easiest way is to put a look on the galaxy.log file (/usr/local/galaxy/galaxy.log or something similar depends on your installation).

ADD COMMENTlink written 18 months ago by Rob50
1
gravatar for nitesh.turaga
18 months ago by
nitesh.turaga100
United States
nitesh.turaga100 wrote:

Take a look at what happens exactly when a Galaxy job is run in this Wiki (you want, "The Big Picture" file).

https://github.com/varunshankar/galaxy-godocker/wiki/%5BTUTORIAL%5D-Create-a-new-runner-for-Galaxy

ADD COMMENTlink written 18 months ago by nitesh.turaga100
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