Question: Using The Public Server For Analysis
0
David Martin • 50 wrote:
Hello,
I have a total 84 GB of Illumina reads (20 lanes total). I wasn't
sure if I could analyze this amount of data on the public server or if
this would bog down the system. I am looking to do a gene expression
comparison between two groups of 10 animals using Tophat and
Cufflinks. Can anyone tell me if this is okay or if I must try and
use the Cloud for this analysis.. I am assuming the FTP option is the
best for uploading this data. Thank you,
David Martin
To: Rory Kirchner
Cc: Martin, David A.; galaxy-user@bx.psu.edu
Subject: Re: [galaxy-user] Galaxy for gene expression comparison
Hi all,
I merged Rory's changes into galaxy-central, so Cuffdiff now supports
replicates. I'll see what I can do for Cuffcompare; in the near-term,
repeated merging using Cuffcompare will produce a GTF file that is
both
correct and usable with Cuffdiff.
Thanks,
J.
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modified 7.8 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7.8 years ago by
David Martin • 50
