Question: Using The Public Server For Analysis
7.6 years ago by
David Martin • 50
David Martin • 50 wrote:
Hello, I have a total 84 GB of Illumina reads (20 lanes total). I wasn't sure if I could analyze this amount of data on the public server or if this would bog down the system. I am looking to do a gene expression comparison between two groups of 10 animals using Tophat and Cufflinks. Can anyone tell me if this is okay or if I must try and use the Cloud for this analysis.. I am assuming the FTP option is the best for uploading this data. Thank you, David Martin To: Rory Kirchner Cc: Martin, David A.; email@example.com Subject: Re: [galaxy-user] Galaxy for gene expression comparison Hi all, I merged Rory's changes into galaxy-central, so Cuffdiff now supports replicates. I'll see what I can do for Cuffcompare; in the near-term, repeated merging using Cuffcompare will produce a GTF file that is both correct and usable with Cuffdiff. Thanks, J.
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