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• Tool Metadata/Workflow Metadata
  Hello everyone, I am working on a tool that will hopefully have the capability to pull metadata f...
• TopHat troubleshooting about metadata
  Hi, I am novice to RNA-Seq Analysis and Galaxy server. Currently am running a work-flow of 40 ste...
• mpileup metadata problem in workflow
  I've got a workflow that uses the old samtools mpileup (v0.0.1) on the main galaxy instance. The ...
• "An error occurred setting the metadata for this dataset"
  Hello, I'm just reporting I'm getting "An error occurred setting the metadata for this dataset" f...
• How can I get the current history ID from a workflow step
  I am looking for a way to get the current history ID from a workflow step.  I am building a tool...
• Embedabble Workflows And Automating Execution
  Two questions: 1. Is it possible to embed a workflow inside another workflow? 2. Is it possible...
• problems running an extracted workflow
  I am having a problem running a workflow I constructed.  The workflow involves: 1) mapping DNA se...
• Tophat failure and calling for error in setting metadata
  Hello, Tophat is consistent in showing errors and does not give proper results to further the wor...
• cummerbund tool error
  Hello, I recently tried differential gene expression analysis using an established workflow. I h...
• November 24, 2010 Galaxy Development News Brief
  November 24, 2010 Galaxy Development News Brief Here are the highlights of the following upgrade...
• Workflows With Tools That Use Dbkey
  Hello, Is there a way to add a tool that needs a 'dbkey' information (that is - a genome metadat...
• January 31, 2011 Galaxy Development News Brief
  January 31, 2011 Galaxy Development News Brief http://bitbucket.org/galaxy/galaxy- central/wiki/...
• How to get the name of the file (.dat) through the API?
  I'm trying to use Galaxy for the NGS analysis. I'm running it on a server, so I don't use/need th...
• Workflow only runs first step and then stops
  Hello, I am trying to learn how to process RNA-Seq datasets with Galaxy to compute read counts pe...
• failure to set metadata
  I was running a tophat alignment as part of a workflow and the flow failed because of failure to ...
• Naming Files Automatically
  Hi all. I'm creating a workflow that uses input files named by their barcodes, and I'd like to kn...