Question: Cuffmerge fails to merge gtf files
0
gravatar for ms5168
19 months ago by
ms51680
ms51680 wrote:

Hello,

I am trying to merged to assembled transcripts produced by cufflinks using cuffmerge.

I am getting the following error message: merge_cuff_asms v1.0.0 cuffmerge -o cm_output -p 6 -g /galaxy-repl/main/files/016/369/dataset_16369716.dat --min-isoform-fraction 0.05 /galaxy-repl/main/jobdir/013/298/13298468/working/tmpCm8Ack Fatal error: Matched on Error Error running cuff merge.

I would appreciate any help with this.

Thanks

cufflinks • 474 views
ADD COMMENTlink modified 19 months ago • written 19 months ago by ms51680
0
gravatar for amaheras7091
19 months ago by
amaheras709110
amaheras709110 wrote:

Hi,

Are you trying to merge just the assembled transcripts, or the assembled transcripts and the skipped transcripts?

ADD COMMENTlink written 19 months ago by amaheras709110
0
gravatar for ms5168
19 months ago by
ms51680
ms51680 wrote:

Hi,

Just the assembled transcripts

ADD COMMENTlink written 19 months ago by ms51680

I wonder if it makes a difference if you try merging both the assembled and the skipped transcripts

ADD REPLYlink written 19 months ago by amaheras709110
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