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Question: Conditional Output Dependent on Conditional Input
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gravatar for katherine.beaulieu014
2.4 years ago by
katherine.beaulieu014 • 80
katherine.beaulieu014 • 80 wrote:

Hi everyone, I am looking to create a tool which imports files from a filesystem I have installed on my local machine. I want to give the user the option of using an absolute path or giving them a list of existing files in their filesystem. Everything seems to work up until the point where I try to submit the job as galaxy says it can't find the variable needed to pass to the label of my output parameter. If anyone has any suggestions please let me know!
tool import galaxy • 712 views
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modified 2.4 years ago • written 2.4 years ago by katherine.beaulieu014 • 80
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gravatar for Jennifer Hillman Jackson
2.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Datasets need to be incorporated into Galaxy before use with tools. Loading data from the file system into a Shared Data Library is one solution for an admin. This could be scripted through the API to help with admin overhead tasks.

https://wiki.galaxyproject.org/Admin/DataLibraries/Libraries

More is in the Admin and API sections of the same wiki as subtopics.

Note that the Data Library UI has changed a bit since that wiki was created, but the basic usage is the same.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.4 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for katherine.beaulieu014
2.4 years ago by
katherine.beaulieu014 • 80
katherine.beaulieu014 • 80 wrote:

Thanks for the reply, I think the problem was due to an error in my logic but the problem seems to be fixed now!:)
ADD COMMENT • link written 2.4 years ago by katherine.beaulieu014 • 80
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