Question: Wrong axis labelling of CummeRbund scatter plot
0
gravatar for claudia.hagedorn
2.2 years ago by
Germany
claudia.hagedorn0 wrote:

Hi all,

I am plotting my CuffDiff results in a scatter plot using CummeRbund. Without log10 transformation on FPKM values axes range up to 10000, but when applying log10 transformation on FPKM values, axes still range to 1000 - which seems to be too high?! Even 10 seems fairly high....What could be the problem here? enter image description here enter image description here

Another thing, when plotting a volcano plot there are o significant genes (red), although some of the not-significant genes (black) match the criteria of significance (p<0.05, log2(fold-change) -1/1). Any ideas?

enter image description here

Thank you so far!

rna-seq • 599 views
ADD COMMENTlink written 2.2 years ago by claudia.hagedorn0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 128 users visited in the last hour