Question: Creating galaxy pages with Immport Data
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gravatar for Sara Mohammadi
20 months ago by
United States
Sara Mohammadi50 wrote:

I want to create a page through the galaxy and import some gene expression and other data which I got from Immport. Data are in SQL format and I used RImmPort analysis package in R to analysis the data. I need to know how can I start to build my own local galaxy pages and upload the Immport data into it and develop the visualization in that?

galaxy • 477 views
ADD COMMENTlink modified 20 months ago by Jennifer Hillman Jackson24k • written 20 months ago by Sara Mohammadi50
0
gravatar for Jennifer Hillman Jackson
20 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Pages incorporate other Galaxy objects (Datasets, Histories, Workflows, and Visualizations). Start by loading the data in a format accepted by Galaxy. Tabular might be a good choice, but BED, Interval, GTF, and others are options with the native visualization tool Trackster.

Pages do not have a step-by-step tutorial (but possibly should!). However, there are just a few functions and linking in other existing Galaxy objects is one of them. View the list of current published Pages at http://usegalaxy.org for examples of how others format these. Galaxy Objects are defined here.

If you get stuck using a specific Page function, write back with the details and we can help more.

Take care, Jen, Galaxy team

ADD COMMENTlink written 20 months ago by Jennifer Hillman Jackson24k
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