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• Tuxedo_Custome build genome
  I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my ...
• using an imported genome
  How do I format an imported genome fasta file so that I can use it as the database for BEDtools f...
• Add Tribolium Genome
  I thought that the genome sequence for Tribolium castaneum (Tcas3.0) was in the genome pull-down,...
• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• Uploading other Reference genome
  Can I upload my own reference genome, i.e. Toxoplasma gondii to map RNAseq data to?
• No genome of Solenopsis invicta in galaxy
  Hello, there is no genome of fire ants Solenopsis invicta. How can I do for that? Could anybody ...
• Create a BedGraph of genome coverage
  Hello! Excuse me, where can I find "Create a BedGraph of genome coverage" tool?
• SacCer3 reference genome for SnpEff
  I saw that there was a ticket made in Trello (15 months ago) to add the SacCer3 reference genome ...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• Genome build accession for Galaxy build-in genomes
  How can I find exact genome build (NCBI accession number, like GCA_000001405.17) for build-in gen...
• Tophat can't see the build-in reference genome?
  I successfully fetch an hg19 and build an bowtie2 index with Data managers. Bowtie2 can see the r...
• Hg19 With Rcrs
  Dear Galaxy,Before the new modifications, i was using hg19 human genome with the rCRS mitochondr...
• Adding a custom genome to a history
  Can anybody help me to download the genome GCA_002204375.1 to my galaxy workflow so I can align m...
• Can a genome that's been released be added so I can map against it
  Hi there, I will be mapping my RNAseq reads to a genome of interests soon. Mapping with Bowtie2 ...
• genome mappability and peak calling
  I am working with a brassica plant that it is not the model Arabidopsis thaliana. How important i...
• Velvet in usegalaxy.org
  How can i use velvet assembler in usegalaxy.org for de novo whole genome assembly. ?
• Reference Genome how does it validate
  I have a very basic question. We map the m-RNA sequence cDNA with the reference genome and then b...
• Add a reference genome
  Dear Mr./Ms., I just want to use HISAT in RNA-Seq, and I want to use Pseudomonas aeruginosa ...
• Genome mapping with Bowtie 2
  Hello,   I would like to map my data against Mycobacterium leprae TN genome but it is not in th...
• Adding reference genome to Galaxy
  Hi, I want to add reference genome(hg19) from UCSC main table to my Galaxy account,how can I do t...
• inquiry about the reference genome
  When i wanted to analyse the result of the WGS for a c.elegans mutant ,i found that i do not know...