Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: problem with visualizing VCF files in IGV
1
gravatar for nazaninhoseinkhan
2.5 years ago by
nazaninhoseinkhan • 10
nazaninhoseinkhan • 10 wrote:

Hi every body,

I am trying to visualize a VCF file (VCFannotation output from Galaxy) in IGV.

It seems this file is properly imported, but nothing is displayed. Moreover the message "no variants found" is reported.

Can anybody help me to find out where the problem is?

Thank you in advance

Nazanin
igv vcfannotation • 1.0k views
ADD COMMENT • link •
modified 13 months ago by supriyachakraworty537 • 0 • written 2.5 years ago by nazaninhoseinkhan • 10
0
gravatar for supriyachakraworty537
13 months ago by
supriyachakraworty537 • 0
supriyachakraworty537 • 0 wrote:

As You have mentioned that you are facing issue to visualize a VCF file. There are two methods to view a VCF file one is a manual method and another is by using a third-party tool. According to your problem, I will suggest you proceed with a third-party tool. Which is easy to use and it gives 100% accurate result. There is a by the name of Systools vCard Viewer Freeware. This tool not only displays the contact details it also shows including the images. You can open, read and view VCF files in bulk.

ADD COMMENT • link modified 13 months ago • written 13 months ago by supriyachakraworty537 • 0
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour