Question: Galaxy--Upload Data File
0
gravatar for Nan Deng
7.7 years ago by
Nan Deng10
Nan Deng10 wrote:
Hi, I installed Galaxy locally, and just start to use it, and I want to use it to align my short reads with fastq format using Tophat. The first thing I need to do is uploading my data file. If the data is small then that's no problem, but my data is about 5G, so when I upload, it took very long time (it is still uploading). Is it normal? and could you let me know how long it will take? I think since both Galaxy and my data are on my local machine, it should be very easy to let Galaxy know where the data is rather than uploading for such a long time. Thanks Nan
galaxy • 1.3k views
ADD COMMENTlink modified 7.7 years ago by Jennifer Hillman Jackson25k • written 7.7 years ago by Nan Deng10
0
gravatar for Jennifer Hillman Jackson
7.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Takako, The best way to load data locally is to use the the method described here: https://bitbucket.org/galaxy/galaxy- central/wiki/DataLibraries/UploadingFiles Please let us know if we can help more, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org
ADD COMMENTlink written 7.7 years ago by Jennifer Hillman Jackson25k
Would it be possible to configure Galaxy to simply refuse to upload files greater than 2 GB since almost no browsers seem to support it? A large number of people seem to run into this issue. -Farhat
ADD REPLYlink written 7.7 years ago by Farhat Habib80
Hi Farhat, This is reasonable suggestion, I'll pass this along to the development team for consideration. Thanks for using Galaxy! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD REPLYlink written 7.7 years ago by Jennifer Hillman Jackson25k
Hi Jen, If you do that, please make it an option in universe_wsgi.ini. It's fine if uploads of > 2GB will be disabled by default, but please allow me to enable it if it's working for me... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online
ADD REPLYlink written 7.7 years ago by Pieter Neerincx360
Hi Pi, Your ideas are great, too. The dev team appreciates all input and this will be passed along, too. Thanks for the feedback! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD REPLYlink written 7.7 years ago by Jennifer Hillman Jackson25k
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