Hi, I've been running some RNA-seq analysis jobs on the Galaxy test server with PapAnu2 built-in and TopHat ran fine, but Cufflinks failed with the following error. I noticed the banner on Usegalaxy indicating some jobs were running on Jetstream and noted the job was queued for Jetstream. I couldn't find any recent posts reporting anything like this. Any ideas what I can do to avoid this error? Thanks, Brian
Dataset generation errors
Dataset 57: Cufflinks on data 91 and data 26: gene expression Tool execution generated the following error message:
Fatal error: Matched on ERROR: ERROR:galaxy.util:ERROR: Unable to read builds for site file tool-data/shared/ucsc/ucsc_build_sites.txt ERROR:galaxy.util:ERROR: Unable to read builds for site file tool-data/shared/gbrowse/gbrowse_build_sites.txt
The tool produced the following additional output:
cufflinks v2.2.1 cufflinks -q --no-update-check -I 300000 -F 0.100000 -j 0.150000 -p 10 -G /jetstream/iu-scratch0/test/jobs/539321/inputs/dataset_774016.dat /jetstream/iu-scratch0/test/jobs/539321/inputs/dataset_776754.dat
