Question: Fastx_Clipper.Xml And Fastq Illumina 1.3+?
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gravatar for Peter
7.9 years ago by
Peter260
Peter260 wrote:
Hi all, Should the fastx_clipper.xml allow Illumina 1.3+ FASTQ as well as Sanger and Solexa FASTQ (and FASTA)? i.e. replace this: <param format="fasta,fastqsolexa,fastqsanger" name="input" type="data" label="Library to clip"/> with this: <param format="fasta,fastqsolexa,fastqillumina,fastqsanger" name="input" type="data" label="Library to clip"/> Peter
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ADD COMMENTlink modified 7.8 years ago by Jennifer Hillman Jackson25k • written 7.9 years ago by Peter260
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gravatar for Jennifer Hillman Jackson
7.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Peter, For now we are going to recommended just using the Fastq Groomer first, then the Clipper, to keep the tools set simple. Apologies for the late reply, we were discussing the option internally. Thanks for all the great ideas and contributions! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD COMMENTlink written 7.8 years ago by Jennifer Hillman Jackson25k
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