Question: what work flow is to used in galaxy for RNA structure Analysis
0
gravatar for shahnawaz.cirbsc
2.4 years ago by
India
shahnawaz.cirbsc0 wrote:

I want to Predict the tRNA structure by using galaxy form my dissertation in Ms program and I am new to NGS RNA structure Analysis using Galaxy and having problem in deciding the work flow, Inputs and Output also with the analysis. Help me with the workflow needed to carry out may dissertation successfully.

rna-seq tophat galaxy • 611 views
ADD COMMENTlink modified 2.4 years ago by Jennifer Hillman Jackson25k • written 2.4 years ago by shahnawaz.cirbsc0
0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

A standardize workflow from the core team does not exist yet, but is planned for. A pre-existing workflow wouldn't be useful for a dissertation if used exactly, but could provide guidance. When complete, it will appear on this wiki: https://wiki.galaxyproject.org/Learn/GalaxyNGS101

Meanwhile, reviewing publications, comparing the methods/tools used against what is available at http://usegalaxy.org and at http://usegalaxy.org/toolshed (the latter for use in a local/cloud Galaxy), reviewing the sources and manuals for those tools (generally in the help section - or google for the tool), and developing your own workflow is the solution.

Best wishes for your project, Jen, Galaxy team

Ps: Others who wish to share more are still welcome to post!

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 132 users visited in the last hour