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Question: what work flow is to used in galaxy for RNA structure Analysis
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gravatar for shahnawaz.cirbsc
2.6 years ago by
shahnawaz.cirbsc • 0
India
shahnawaz.cirbsc • 0 wrote:

I want to Predict the tRNA structure by using galaxy form my dissertation in Ms program and I am new to NGS RNA structure Analysis using Galaxy and having problem in deciding the work flow, Inputs and Output also with the analysis. Help me with the workflow needed to carry out may dissertation successfully.
rna-seq tophat galaxy • 672 views
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modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by shahnawaz.cirbsc • 0
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gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

A standardize workflow from the core team does not exist yet, but is planned for. A pre-existing workflow wouldn't be useful for a dissertation if used exactly, but could provide guidance. When complete, it will appear on this wiki: https://wiki.galaxyproject.org/Learn/GalaxyNGS101

Meanwhile, reviewing publications, comparing the methods/tools used against what is available at http://usegalaxy.org and at http://usegalaxy.org/toolshed (the latter for use in a local/cloud Galaxy), reviewing the sources and manuals for those tools (generally in the help section - or google for the tool), and developing your own workflow is the solution.

Best wishes for your project, Jen, Galaxy team

Ps: Others who wish to share more are still welcome to post!
ADD COMMENT • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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