I love Deeptools, and so glad that galaxy has moved them to the main server. It's awesome!
I can get the whole compute matrix/draw heatmap to work with the right input files using hg19 BED/BedGraph.
However, I can't the compute matrix to run with data aligned to cow (bostau7). I know that the http://deeptools.ie-freiburg.mpg.de/ only supported a few genome builds, is this the same case since it migrated to the main server? Any plans in the near future to support a wider array of reference genomes? Or is something else wrong with my workflow?