I recently started getting the following error whenever I try to do anything. The last things I did were install some tools from the toolshed (MACS and MACS2). Those worked fine. Then I ran Tophat on some files. When I tried to run cufflinks, I started getting the error. When I try to upload a file I get the error. It seems to trigger anytime a dataset is created. I'm not exactly sure where the error is occuring, and I don't want to go through the trouble of uninstalling MACS/MACS2 if that's not where the problem is, because things were working fine after that. I have tried restarting my computer and upgrading everything. Hope somebody understands python more than I do.
Traceback (most recent call last):
File "/home/user/galaxy/tools/data_source/upload.py", line 10, in <module> import galaxy.model
File "/home/user/galaxy/lib/galaxy/model/__init__.py", line 9, in <module> eggs.require("pexpect")
File "/home/user/galaxy/lib/galaxy/eggs/__init__.py", line 479, in require return c[req.project_name].require()
File "/home/user/galaxy/lib/galaxy/eggs/__init__.py", line 275, in require pkg_resources.working_set.add( dist )
File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 758, in add
TypeError: _insert_on() got an unexpected keyword argument 'replace'