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• Url Problem
  Hi, I have a problem in galaxy to get host/domain name in two different pages. First one is in th...
• Url Problem
  Hi, I have a problem in galaxy to get host/domain name in two different pages. First one is in th...
• Metagenome Analysis
  I have looked through the metagenome tools and looked at the tutorials, and was wondering how one...
• Gene ID from chromosome locus - Cufflinks/Cuffdiff outputs plus other data formats
  Hello, Can anyone help me in how to get the gene ID out of gene locus on galaxy? Thank you,
• Galaxy API - Cross-Origin Request Blocked
  I have tried using getJSON and ajax with credentials to make API calls such as "https://usegalaxy...
• Getting Genome Coordinates for a List of ENSEMBL IDs
  I need to convert a list of ENSEMBL IDs from an RNA-seq dataset to UCSC mm9 genome coordinates. A...
• How to get Cufflinks to show gene ID?
  How can I get Cufflinks to show the gene ID for each sample and not the Cufflinks ID? I have used...
• Galaxy website unreachable
  Greetings, I currently have a big issue with the galaxy website. I can access to this link 'htt...
• Help with SNP to Gene mapping
  Hi, I am new to the domain of bioinformatics and am looking to use computational methods on some...
• Gff Not Recognized In Cufflink
  Dear Team, I've been having a problem with cufflink regarding GFF files. I tried searching the m...
• gene names and gene ids
  hi i have a annotate file of vcf using vcf annotate and in my out i dont have any gene ids thier...
• How to convert gencode ID into ENSEMBL ID
  Hi, I have gene Id derived from gencode and I am trying to convert into gene names, but i think I...
• htseq and cufflinks
  Hi, I have used HTSeq to count the no of mapped reads, the HTSeq gives me the ensemble ids but w...
• How To Get Coordinate Information
  Hello everyone, I have list of such Id's obtained from  ENSRNOG00000000000 and I want to get the ...
• Sending Data To Gbrowse
  Hi, I would like to be able to send data to my GBrowse2.0 instance. I have been trying some thin...
• Calling a tool from bioblend
  Hi, I am trying to call a tool from bioblend: tool_inputs = {'input': vcf_ds['dataset_id'...
• Need help with RNA-seq quantification
  Hi Galaxy Support,   I want to use cufflinks to quantify my own  bam file, which is not from ga...
• RefSeq Annotation using SnpEff
  Hello, I am working with human whole genome sequence. I have called variant using samtools and I...
• How can I get the current history ID from a workflow step
  I am looking for a way to get the current history ID from a workflow step.  I am building a tool...
• Output files after Workflow run is completed
  Hi Everyone, i am working on galaxy with bioblend API and when i have run a workflow with proper ...