Question: significant genes not shown in the scatter and volcano plots
1
gravatar for brarp0619
2.2 years ago by
brarp061910
brarp061910 wrote:

hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it shows only the non significant genes (black dots) and does not show the significant genes. there are significant genes in the cuffdiff output. what could be the problem?

rna-seq • 956 views
ADD COMMENTlink modified 12 months ago by akilabioinfo0 • written 2.2 years ago by brarp061910

Thanks for sending in the bug report with the details. More feedback shortly.

ADD REPLYlink written 2.2 years ago by Jennifer Hillman Jackson25k
0
gravatar for akilabioinfo
12 months ago by
akilabioinfo0 wrote:

Hi,

Even i am having similar problem like this. In valcano plot it shows only non significant genes. There are ~200 genes significant in the cuffdiff output...Please help me..
ADD COMMENTlink written 12 months ago by akilabioinfo0
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