Question: significant genes not shown in the scatter and volcano plots
1
gravatar for brarp0619
21 months ago by
brarp061910
brarp061910 wrote:

hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it shows only the non significant genes (black dots) and does not show the significant genes. there are significant genes in the cuffdiff output. what could be the problem?

rna-seq • 728 views
ADD COMMENTlink modified 7 months ago by akilabioinfo0 • written 21 months ago by brarp061910

Thanks for sending in the bug report with the details. More feedback shortly.

ADD REPLYlink written 21 months ago by Jennifer Hillman Jackson23k
0
gravatar for akilabioinfo
7 months ago by
akilabioinfo0 wrote:

Hi,

Even i am having similar problem like this. In valcano plot it shows only non significant genes. There are ~200 genes significant in the cuffdiff output...Please help me..
ADD COMMENTlink written 7 months ago by akilabioinfo0
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