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• Cufflinks not working from last 4-5 days
  I am using Galaxy for my RNA seq analysis. I put the cufflinks analysis on BAM files last week. T...
• HG38 .gtf file
  Hello. For practise, I am running an RNA-seq analysis on some of the RNA-seq data from Illumina ...
• Cufflinks Error In Galaxy
  Hi galaxy dev team: I just installed galaxy on my ubuntu box and tried to do RNA-seq analysis ...
• Cuffcompare Or Cuffmerge
  Hi all, I read one paper "Differential gene and transcript expression analysis of RNA-seq experim...
• cufflink trancript analysis
  Dear sir, i have run my cufflink analysis on friday but my job does not execute... please help me...
• Jobs do not start in Galaxy for NGS RNA analysis
  In Galaxy main, neither Cufflinks nor Tophat starts the job for ~24hrs. Is there anything wrong?
• RNA-seq analysis- HiSat2 and Cufflinks
  Hello, I am new with RNA-seq data analysis. I am using Cygwin software in order to create a Linu...
• Cufflinks 0.0.7 and CummeRbound
  Hi All,   Has anyone had any experience with running R package CummeRbound with cufflinks veris...
• Job En-Queued, But Not Running
  Hi, I created a workflow ( https://main.g2.bx.psu.edu/u/vijay-uky/w/rna-seq-analysis ) and uploa...
• Multiple mapping to one gene ID using Cufflinks in Galaxy
  I am currently running RNA-seq analysis on rat mRNA in Galaxy using a flow that uses TopHat2 then...
• Small Rna Analysis
  I posted this question previously- IS there any work flow for analysis of microRNA/ small RNA in ...
• Cufflinks not activating
  For the past 3 days, Cufflinks has not been working. Everytime I submit a Bam RNA-seq file for a...
• How to resolve Cufflinks Fatal error: Matched on ERROR
  Hi, I've been running some RNA-seq analysis jobs on the Galaxy test server with PapAnu2 built-in ...
• Tophat error: An error occurred with this dataset
  Hi, I am new to RNA-seq data analysis and want to identify differentially expressed genes from ...
• Rna-Seq Analysis
  Dear all, I am using Galaxy for RNA-Seq analysis. I expect two lists: differentially expressed tr...
• Cufflink Does Not Work!
  Hello Di Nguyen, Without seeing your history, my initial guess is that the SAM output from the m...
• GC and Rik genes
  Hello, I ran an RNA-Seq analysis using Cufflinks. After finishing the analysis I got a long list...
• Rna-Seq Analysis
  Since the pictures are too big for the mailling list. I will upload it in seperate emails. Dear ...
• Galaxy Tool Error Report From Johnwu@Ibms.Sinica.Edu.Tw
  GALAXY TOOL ERROR REPORT This error report was sent from the Galaxy instance hosted on the serv...