Question: Is HISAT2 working in GALAXY?
0
gravatar for cooleel
2.3 years ago by
cooleel0
United States
cooleel0 wrote:

I always can not choose from the build-in reference genomes.

Anyone has the same problem here? or knows the solution?

 

Any suggestions are appreciated.

Thanks.
 

galaxy hisat2 • 777 views
ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by cooleel0
3
gravatar for y.hoogstrate
2.3 years ago by
y.hoogstrate460
Netherlands
y.hoogstrate460 wrote:

Hey cooleel,

Short answer to your title: Yes, HISAT2 is working!

Good news, the question you asked has been before and Jen has given a detailed answer:

HISAT2 - no reference genome available

As she says, you can still use a custom reference genome by selecting "Use a genome from history" and uploading the corresponding fasta file.

 

ADD COMMENTlink written 2.3 years ago by y.hoogstrate460
0
gravatar for cooleel
2.3 years ago by
cooleel0
United States
cooleel0 wrote:

Thanks for the answer!

ADD COMMENTlink written 2.3 years ago by cooleel0
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