First i don't know if this is the correct place to report tool problem. I did not get any bug dataset icon to click on it and report the problem. Please, advice me where to send this question if this is not appropriate place.
I have Sam Tool: Filter SAM or BAM, output SAM or BAM files on FLAG MAPQ RG LN or by region (Galaxy Version 1.1.1) in the middle of my workflow and until a few days ago it was working correctly. Now if I run the workflow I will get the message:
Internal Server Error
Galaxy was unable to successfully complete your request
An error occurred.
This may be an intermittent problem due to load or other unpredictable factors, reloading the page may address the problem.
The error has been logged to our team. If you want to contact us about this error, please reference the following
GURU MEDITATION: #a
However, the workflow runs anyway, but stops just before this Sam Tool. I can go to the history, use this tool manually and then proceeds with other workflows on top of that.
So problem is not that tool is not working but that can't be used as a part of workflow.
Thanks for help.