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• Disk quota full after permanent deletion of data
  My account continues to show that I am over the quota after all my data sets have been permanentl...
• unable to input file in trimmomatic
  Preparing for trinity analysis I try to trim questionable 5' bases. Trying to use 'Trimmomatic', ...
• Problems with FTP and account quota
  it says to use my galaxy credentials but these are not working. i am getting very frustrated. i t...
• Disk usage over quota after permanent delete
  My account continues to show that I am over the quota after data sets are permanently deleted. Is...
• Query in uploading data in stringtie
  When I am using stringtie in galaxy, the one option is **Reference annotation to use for guiding ...
• I am using most of my space yet my histories only show half of that, have I broken it!
  Hello, how long does it take to purge unwanted data as I deleted previous histories and data (I c...
• My galaxy account has suddenly stopped processing. I can upload data, but a single command has been in queue / waiting to run for 48 hours now.
  My galaxy account has suddenly stopped processing. I can upload data, and delete and rename files...
• Galaxy Wrong Disk Usage Information
  Hi, in galaxy data usage is showing complete even though I have deleted all history and data set ...
• Uploaded data are not ready to use
  Hi, guys I've uploaded my BED files through Get Data - Upload files menu. The exact same proced...
• Galaxy Pages - Importing/Downloading Embedded Data.
  Hi All, Hope things are groovy. I am in the process of setting up a Galaxy page on the main serv...
• Galaxy Cloud: Restore Histories with data uploaded to ec2
  Hello, I am currently experimenting with galaxy cloud. Setting it up was very straight forward ...
• clearing up memory on a local installation
  Hello! I am running a local galaxy instance, and suddenly all my processes started failing - I ...
• featureCounts 1.6.0.3 using reference annotation GTF from the history
  I used featureCounts about two weeks ago on one dataset and had no issues. Today I tried running ...
• All history panes perpetually loading
  Hi,  Over the past couple of days, I've been having trouble accessing my current histories in th...
• Query Not Starting
  Hello, I am having problem with starting my query. For days it is showing "Job waiting to run". ...
• How to find histories in your account
  Hi I dont see my history now..i logged out yesterday night and log in today morning..nothing ther...
• Disk Usage do not decrease after deleting/purging files. Real use 37%, shows 85%
  Hi, I have a problem with my account regarding the disk space. Despite deleting all the historie...
• Options For History Description Using Tool Config
  If you configure your tool using the xml config file it displays by default the tool action on da...
• unable to upload data to galaxy cloudman
  I set up a galaxy cloudman instance following the instruction on galaxy wiki ( https://wiki.galax...
• Query for inputting Hisat2 BAM with dataset collections for Stringtie analysis
  Hi, I have data set collections ( 3 biological replicates) that I could run on HiSAT2 and I have...
• Regarding program running in galaxy
  Hi my all mutants are showing error for Select Variants on data 3 and data 31 (log) tool I dont k...
• Tophat job not running
  Dear sir, my top hat job not running. My data were showing some exclamatory sign after running t...
• Blue quota bar? -- What to do when an account is locked because the data usage exceeds quota
  Why is my quota usage bar showing up in blue- and all my jobs are paused in galaxy?
• Cufflinks in galaxy
  When I am using cufflinks in galaxy the option use reference annotation, when selecting use refer...