Question: (Closed) STAR aligner generating genomes takes long time
0
gravatar for xcalle91
2.2 years ago by
xcalle910
European Union
xcalle910 wrote:

Hi, I'm trying to use the STAR  ultrafast aligner, first I need to generate a genome to align to, so, as it is described in the manual I run this command line:

    /pathToStarDir/STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDir --genomeFastaFiles /path/to/genome/*.fa --runThreadN 11

 

GenomeDir contains one fasta file for each human chromosome.

I started it yesterday morning and after 24 hours it does not finish yet...

I wondering if I did something wrong and is stack in a never ending point. I show few post with similar problems but they did not come out with a solution that works for me.

 

I doing it in a computer with 8 cores i7 3.60GHz and 31.3 of memory ram

Thanks in advantage

 

rna-seq star genome • 838 views
ADD COMMENTlink written 2.2 years ago by xcalle910
0
gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello xcalle91!

We believe that this post is does not fit the main topic of this site.

This question is about line-command tool usage. This forum is for Galaxy questions. Try https://www.biostars.org, http://seqanswers.com, http://scicomp.stackexchange.com, etc.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD COMMENTlink written 2.2 years ago by Jennifer Hillman Jackson24k
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