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Question: difference bewteen snps142 and snps141
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gravatar for shja2
3.0 years ago by
shja2 • 10
European Union
shja2 • 10 wrote:

how get data for snps142 as tabular? what the difference between snps141 and 142?
ucsc dbsnp getdata snp141 snp142 • 736 views
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modified 3.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.0 years ago by shja2 • 10
0
gravatar for Jennifer Hillman Jackson
3.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The data can be obtained through the UCSC Table browser or their downloads area. Either can be imported into Galaxy. There are other sources, but this will ensure that the data is a match for UCSC reference genomes included at http://usegalaxy.org.

To extract the data for human hg38 from the Table browser directly into your Galaxy history, use the left tool panel's Get Data: UCSC Main function, then set up the form like the graphic below (change the genome build, region, and other options as desired and see the User Guide for full usage directions including the dbSNP project's build information):

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
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