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• Can Galaxy Help With Comparative Genomics?
  The lab I work with would like to compare a few populations' genomes of a species with an unpubli...
• Need help with "Get Pathways" tool
  Hi,   i am trying to get the KEGG AND GO pathways fro a given ensemble of transcripts with no su...
• Fail To Load Galaxy: Test.G2.Bx.Psu
  i get this error: Internal Server Error i'm trying to load these pages: http://test.g2.b...
• Galaxy 2.2 Won'T Load
  Hi, I'm having trouble loading the galaxy main page http:// main.g2.bx.psu.edu/ from Mueller Bldg...
• Galaxy Page Load Failure
  Hi, Yogeshwar and I in Kateryna Makova's lab have both had trouble loading the galaxy main page h...
• How Should I Include Biological Replicates In Cufflink/Cuffdiff?
  Dear team, I have a few questions regarding RNA-seq data analysis. I want to compare transcripto...
• Best way to get more storage quota
  My name is Mike Walker and I am a Phd student in Scott Lindner’s lab.  Recently, we have been pro...
• Edit Attributes Is Not Saving Changes
  Hi, I'm trying to use the "edit attributes" function and the server is returning a notice indicat...
• History Has 100 Jobs I Did Not Process/Do Not Recognize
  hi, i was using galaxy earlier today. i came back from maybe 2hrs break and now my history has a...
• Cuffdiff: selecting replicates in a different order gives me different numbers of differentially expressed genes. Why?
  I have two groups with four biological replicates per group. I tried comparing group 1 to group 2...
• Tools: Operate On Genomic Intervals: Merge
  Dear Galaxy Help, I was wondering if it would be possible to get the coordinates that caused the...
• Pre-existing wrapper for MISO
  I am looking to see if there is a pre-existing tool wrapper for MISO from the Burge lab. I have l...
• Tools: Merge Regions Of A Single Query
  Hi, I've tried using the "Operate on Genomic Intervals" tool called "Merge regions of a single qu...
• Disk Space rquired to Install a Galaxy Instance on a Cluster (for small lab)
  I have found my galaxy account very useful but every so often I have to download or delete data f...
• What galaxy tool should I use to compare these regions?
  What galaxy tool should I use to compare CTSS (CAGE-detected transcription start sites) regions w...
• Fwd: Tools: Merge Regions Of A Single Query
  Date: September 27, 2006 5:58:47 PM EDT To: galaxy-user@bx.psu.edu Subject: tools: merge regions...
• Suggestion
  Is it possible to have an option of displaying results in a separate window? This would be helpfu...
• Gene Name In Cufflink/Compare/Diff
  Hi all, when I run a RNASeq analysis using tophat, cufflink, coffcompare and cuffdiff by alignin...
• Postdoc Position
  Dear Galaxy users, I am hoping if you could please take note and distribute the attached Postdoc ...
• Bowtie Stuck For Past Day
  Hi, I started a series of bowtie runs yesterday but nothing has happened. i tried rerunning them ...
• Differential comparison of Chip-Seq/SICER data
  Hello all. I am looking for some help with a computational genetics task in Galaxy, but I am new ...