Galaxy subtract intervals genome

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Question: Galaxy subtract intervals genome

3.0 years ago by

xcalle91 • 0

European Union

xcalle91 • 0 wrote:

Hi!

I'm using Galaxy (Operate in genomic intervals : Subtract) to remove exons from a track. this operation works fine but the problem is that my track also has a column for the score of each region, this column is missing when I subtract the exons. Is it anyway to say Galaxy to keep this column in the output?

thanks.

galaxy subtract • 639 views

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modified 3.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.0 years ago by xcalle91 • 0

3.0 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If score (or other content besides chrom, start, end) is only in the interval data that is subtracted, then it will not appear in the result. The manipulated or filtered intervals plus remaining content of the primary file (the second one entered into the tool form) is what the tool reports in the result dataset.

If there is still a problem, please share a snippet of each of the datasets along with the datatype assigned to each the query options selected on the tool form (including input order).

Thanks, Jen, Galaxy team

ADD COMMENT • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k

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