Question: Convert genome coordinates from hg19 to mm9
1
gravatar for kmc.8oxodip
15 months ago by
kmc.8oxodip10
Korea, Republic Of
kmc.8oxodip10 wrote:

Hello,

I'd like to use the COSMIC data to compare with my mouse exome-seq data,

so I'm trying to convert the build of COSMIC data from hg19 to mm9.

But, actually when I open the 'convert genome coordinates' tool in the 'Lift-Over' menu,

the second dropdown box named as 'To' was unchangeable, just showing a message 'No options available'.

What should I do to solve this problem?

galaxy • 342 views
ADD COMMENTlink modified 15 months ago by Jennifer Hillman Jackson21k • written 15 months ago by kmc.8oxodip10
0
gravatar for Jennifer Hillman Jackson
15 months ago by
United States
Jennifer Hillman Jackson21k wrote:

Hello,

Liftover is problematic at this time at http://usegalaxy.org and the team is actively working to correct the problem. Please follow this ticket for updates: https://github.com/galaxyproject/galaxy/issues/1039

Alternatives include using the same tool at UCSC http://genome.ucsc.edu (Utilities -> Batch Coordinate Conversion) and/or setting up a local Galaxy to do the task.

Thanks for reporting the problem, Jen, Galaxy team

ADD COMMENTlink written 15 months ago by Jennifer Hillman Jackson21k
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