Question: Refseq and Ensembl canonical transcripts for hg38
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gravatar for juliesmith86904
2.2 years ago by
United States
juliesmith869040 wrote:

Hi, 

Does anyone know what is the best way to download the ENSEMBL and REFSEQ canonical transcripts for HG38? Any suggestions would be greatly appreciated! 

thanks,

Julie 

ensembl refseq datasources • 786 views
ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson23k • written 2.2 years ago by juliesmith869040
0
gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

For RefSeq data, use the tool "Get Data: UCSC Main". 

For ENSEMBL data, either extract from UCSC as above, or use the tool "Get Data: Biomart". 

Both external data providers have help for usage (see their web forms) and when accessed from within Galaxy, will return results to your active Galaxy history by default.

If you find data at another location (these sources or others), any data hosted by public URL can be loaded into Galaxy with the "Upload" tool or by using the provided "Send to Galaxy" option (when available). GalaxyNGS101#Getting_data_in

Thanks! Jen, Galaxy team

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by Jennifer Hillman Jackson23k
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