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• Where in the galaxy folders can I find the python wrappers? please be specific
  May you please tell me which folder in the Galaxy-dist folders where the wrappers are? how do I ...
• Clean galaxy install differs from Galaxy hg update
  Hello,   I just did a clean install on a standalone machine of galaxy. Now I noticed that all t...
• How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder with the name of the SRA identifier?
  How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder...
• Include A Data Folder Into Galaxy
  Hello, hopefully this is a simple question: How can I include a folder into the Galaxy server? ...
• Permissions On Folder Created By Galaxy
  Hi, I would like folders created by Galaxy under the location defined by the "file_path" paramet...
• Load data files in Galaxy (local) from same machine
  Hi, I have a local Galaxy, is it possible to load data from account/path of another user on the ...
• Error in JSON return from API, bug or "feature"?
  Hi, When making an API call through bioblend to return all folders in a library, I noticed all n...
• How to align 500 fastq unpaired files to an uploaded reference and put every single result to a new folder?
  How to align separately 500 fastq unpaired files to an uploaded reference and put every single re...
• PEAKachu No folder with .gff files specified Error
  Have you experienced this error for PEAKachu in Galaxy?: ** Initializing replicons and read...
• Error in JSON return from API, bug or "feature"?
  Hi, When making an API call through bioblend to return all folders in a library, I noticed all n...
• Past Welcome Page Still Showing Up
  I'm new to Galaxy, and picking up on someone else's work with a local instance of Galaxy. So far ...
• Temporary Files
  Dear all, we extended the galaxy functionality with a couple of smaller custom scripts. Now we a...
• Input/Output directory in local Galaxy installed on Windows VMBox
  Hello! I'm just a beginner and quite new to NGS data analysis. I successfully installed the Gal...
• Can not make folder under /usr/local/bin in order to use FASTX-toolkit in Galaxy
  Dear all, I want to use FASTX-toolkit to split a large FASQ file into small ones based on barcod...
• Recursive Folder Checkbox Selection Tool
  Hello, I’m coming to you because I have a problem with a galaxy tool I’m making. Indeed, I have ...
• Is it possible to specify the download folder to be on the server hosting the galaxy instance?
  Hi I would like to know if it possible to for an administartor to specify (presumably in some c...
• Problems with data libraries user upload folder
  Dear All,   I recently reinstalled galaxy and realized, that the data libraries have changed (I...
• Difference Between a Python Tool vs. Wrapper
  What is the difference between the Wrapper and the Tools? Please be explicit. I have a limited b...