Question: Lastz Error Comparing FASTA to Text File
0
gravatar for kr937212
2.9 years ago by
kr93721210
United States
kr93721210 wrote:

I am having trouble running a LASTZ analysis on any FASTA file comparing it to my text file. This is happening both when I host galaxy locally and when I try to run it on the usegalaxy.org server. 

This is the error I get when I run on usegalaxy.org:

Traceback (most recent call last): File "/scratch/03166/xcgalaxy/main/staging//10340218/tool_files/lastz_wrapper.py", line 38, in <module> from galaxy import eggs ImportError: cannot import name eggs

However I get a different error when I run on my locally cloned version of galaxy:

Could not determine Lastz version /bin/sh: lastz: command not found /bin/sh: lastz: command not found

Any help or advice would be greatly appreciated.

Thanks!

ADD COMMENTlink modified 2.9 years ago by Jennifer Hillman Jackson25k • written 2.9 years ago by kr93721210
0
gravatar for Jennifer Hillman Jackson
2.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The lines in the custom reference genome may need to be wrapped. Use this tool: FASTA Width formatter

Custom Genome Help

If this does not resolve the problem, please send in your http://usegalaxy history as a bug report with a link to this post in the comments.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.9 years ago by Jennifer Hillman Jackson25k
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