Question: Error After Upgrade
0
Farhat Habib • 80 wrote:
Dear All,
After upgrading using
hg pull -u -r f09915c8da94
then,
hg diff
after which it asked me to upgrade db which I did using,
sh manage_db.sh upgrade
Galaxy fails to start on my local install.
galaxy.model.custom_types DEBUG 2010-09-13 11:41:18,475 pysqlite>=2
egg successfully loaded for sqlite dialect
Traceback (most recent call last):
File "/home/farhat/galaxy-central/lib/galaxy/web/buildapp.py", line
82, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/farhat/galaxy-central/lib/galaxy/app.py", line 42, in
__init__
self.tool_data_tables = galaxy.tools.data.ToolDataTableManager(
self.config.tool_data_table_config_path )
File "/home/farhat/galaxy-
central/lib/galaxy/tools/data/__init__.py",
line 22, in __init__
self.add_from_config_file( config_filename )
File "/home/farhat/galaxy-
central/lib/galaxy/tools/data/__init__.py",
line 31, in add_from_config_file
tree = util.parse_xml( config_filename )
File "/home/farhat/galaxy-central/lib/galaxy/util/__init__.py", line
101, in parse_xml
tree = ElementTree.parse(fname)
File "/home/farhat/galaxy-central/eggs/elementtree-1.2.6_20050316-py
2.6.egg/elementtree/ElementTree.py",
line 859, in parse
tree.parse(source, parser)
File "/home/farhat/galaxy-central/eggs/elementtree-1.2.6_20050316-py
2.6.egg/elementtree/ElementTree.py",
line 576, in parse
source = open(source, "rb")
IOError: [Errno 2] No such file or directory:
'./tool_data_table_conf.xml'
Any help with rectifying this?
Yours,
-Farhat
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modified 8.2 years ago
by
Brad Chapman • 240
•
written
8.2 years ago by
Farhat Habib • 80
