Question: Request for a new shared GTF file for iGenomes
0
gravatar for karmella.haynes
3.0 years ago by
United States
karmella.haynes40 wrote:

First, thank you to the generous and thoughtful user who uploaded the human hg19 GTF file to Shared Data > Libraries > iGenomes.

I have a request for a new GTF file to be shared in the same location: mouse UCSC mm10. Currently mm9 is on Galaxy. I would share mm10 myself, but I cannot figure out how to get FTP file transfer to work on my computer (Mac OS 10.7.5).

Could a kind-hearted community member please transfer the UCSC mm10 GTF to Shared Data > Libraries > iGenomes?

It can be downloaded from here: https://support.illumina.com/sequencing/sequencing_software/igenome.html

ADD COMMENTlink modified 3.0 years ago by Jennifer Hillman Jackson25k • written 3.0 years ago by karmella.haynes40
0
gravatar for Jennifer Hillman Jackson
3.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This is a good idea and already has a open ticket with our team. 

Meanwhile, if you uncompress the file from iGenomes locally on your own computer, it will contain a file named genes.gtf. This is reference annotation dataset. Just up load that. The complete archive will not load via URL as it has an unsupported mulit-file compression types.

Hope this helps! Jen, Galaxy team

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 119 users visited in the last hour