I'm somewhat new to the game and struggling with the GATK unified genotyper.
I found a dbsnp file (in vcf format) but Galaxy isn't recognising it as a vcf file. I tried modifying it under attributes and that changed the file type to vcf but galaxy still isn't accepting that I have a vcf file.
I then noticed there was a message on the file itself saying that galaxy had a problem uncompressing the zipped data, so i've unzipped and am uploading again but the file is 27gb and i'm running out of space! All of my fastq files were zipped and that wasn't a problem.
Surely there is an easier way? Any thoughts would be much appreciated.