Question: 'Extract Workflow' losing tool parameters
1
gravatar for Mo Heydarian
22 months ago by
Mo Heydarian690
United States
Mo Heydarian690 wrote:

Hi Galaxy community,

I've noticed recently when I 'Extract Workflow' from my history (on the Main Galaxy) that tools lose the input parameters, particularly tools that require column inputs. I've seen this for the 'Join two Datasets', 'Compare two Datasets', and 'Tabular-to-Fasta' tools, so far.

 

 

workflow history • 474 views
ADD COMMENTlink modified 22 months ago by Jennifer Hillman Jackson22k • written 22 months ago by Mo Heydarian690

Thanks for reporting this, we will do some testing and get back to you. Just to confirm, this is occuring at http://usegalaxy.org?

Best, Jen, Galaxy team

ADD REPLYlink written 22 months ago by Jennifer Hillman Jackson22k

Hi Jen,

Yes, this is happening on usegalaxy.org

ADD REPLYlink written 22 months ago by Mo Heydarian690
0
gravatar for Jennifer Hillman Jackson
22 months ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

I was able to confirm that certain input parameters are not displayed in the Workflow "Edit" view. However, when a Workflow includes one of these tools that has "input columns verified at run-time", execution is successful and as expected.

I found that the only parameters not displayed are of the "run-time verified" type. Others that may appear on the tool form ('Compare two datasets' is a good example of this) are displayed in the Workflow editor. 

A Trello ticket has been opened to review the behavior. It includes a shared test history and workflow. Please let us know if the issue was not completely captured (either here, or by commenting directly in Trello on the ticket): https://trello.com/c/PpGRyTWo

Thanks for reporting this! Jen, Galaxy team

ADD COMMENTlink written 22 months ago by Jennifer Hillman Jackson22k
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