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• Galaxy Bedtools: Overlap or Intersect
  I have predicted CNV regions from 3 different tools. I want to check the overlapping regions betw...
• Annotation Histone Modification ChIP-seq
  Hi there, I am new to this and have used MACS for peak calling and I now want to annotate the pe...
• multibamsummary vs multibigwigsummary
  I am in the process of comparing the similarity between two ChIP-seq conditions. According to the...
• Fwd: Tools: Merge Regions Of A Single Query
  Date: September 27, 2006 5:58:47 PM EDT To: galaxy-user@bx.psu.edu Subject: tools: merge regions...
• filter by fasta ids
  Hi. I am new to using Galaxy and I'm trying to download useful tools. I have a set of masked file...
• Flanking regions from SNP list
  Hello  Using the RNA seq data and have performed de novo assembly with non-model species. I have...
• Read counts for limited genome regions
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• Comparative Analysis
  I need to compare genome sequences of several Salmonella enterica serovars. I will be looking fo...
• Flaking Regions Across Tss
  I am interested in getting regions flanking TSS, I am using Glaxaxy and have downloaded TSS sites...
• Problem with Annotation Regions using ANNOVAR Annotate VCF
  Hello, I'd like to use ANNOVAR Annotate VCF via Galaxy Web (Galaxy Version 0.2) to annotate vari...
• Tools: Merge Regions Of A Single Query
  Hi, I've tried using the "Operate on Genomic Intervals" tool called "Merge regions of a single qu...
• Counting Intervals In One File Overlapping Intervals In Another File - What Are The Hidden Settings?
  Hi, I am using the "Count intervals in one file overlapping intervals in another file" tool (part...
• Question About Cuffdiff
  Hi, I am confused about the first line in cuffdiff (using Galaxy on the cloud, not sure if it's ...
• Search For Tf Binding Site Patterns In Galaxy
  I am trying to come up with a nice workflow/tutorial for the use of Galaxy to search for Transcr...