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Question: Beginner to Galaxy local installation - tools and reference genomes population?
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gravatar for vebaev
3.3 years ago by
vebaev • 130
vebaev • 130 wrote:

Dear all,

I'm a very new to a local installation of Galaxy. I have insyalled a local copy by:

% git clone https://github.com/galaxyproject/galaxy/

Is the Galaxy Shed the main official source I have to get the main tools - bowtie, tophat, cufflinks, samtools etc? (I suppose they did not came with the copy? And how to be sure that I put all the basic ones as the web-version so all my analysis tabs are working properly?)

More over what is the case of the reference genomes - is there a Galaxy Shed for genomes and such? 
tools galaxy local • 938 views
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modified 3.3 years ago by Bjoern Gruening ♦ 5.1k • written 3.3 years ago by vebaev • 130
1
gravatar for Bjoern Gruening
3.3 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi,

please have a look at the Galaxy Tool Shed: https://wiki.galaxyproject.org/ToolShed

Here you can get anything you want, especially Tools and Data managers (https://wiki.galaxyproject.org/Admin/Tools/DataManagers). Data managers will get you the reference genomes.

Have fun with Galaxy,

Bjoern
ADD COMMENT • link written 3.3 years ago by Bjoern Gruening ♦ 5.1k

Is it obligatory to move to mySQL and others options for production, or I can work also as it is -  https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer

ADD REPLY • link written 3.3 years ago by vebaev • 130
1

Please start a new thread if you have a second question.

 

 

ADD REPLY • link written 3.3 years ago by Hotz, Hans-Rudolf • 1.8k
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