Question: Import .fasta dataset to NGS: GATK
gravatar for regina.casanova.90
2.2 years ago by
regina.casanova.900 wrote:

Hi! I have a problem, I have found on the Published Histories a dataset that I need for my assignment and I select all the files within that History and import them into my current history, they all process normal and without errors and the file hg19.fasta is there in fasta format, but when I try to use some GATK tools such as Indel Realigner it says that there isn't any fasta dataset available on my history, why can't I use it? Why does this happens? Some colleagues of mine have the same problem. Can I please have some advise?

fasta gatk • 557 views
ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson22k • written 2.2 years ago by regina.casanova.900
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson22k wrote:


Please see section 2.10 of the Galaxy support wiki:

My guess is that the datatype "fasta" has not been assigned. The wiki above explains how to do that.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.1 years ago by Jennifer Hillman Jackson22k
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