Question: Installing MACS stuck at 'Cloning'
0
gravatar for alim
3.0 years ago by
alim10
United Kingdom
alim10 wrote:

Dear all, 

I am trying to install MACS from the Tool Shed onto my local Galaxy but it is stuck at the 'Cloning' step. Does anyone have such experience before and could advice on what to do please ? 

Also, can anyone share their experience between using MACS and MACS2 please ? How comparable are the data ?

Many thanks,

Alfred 

galaxy macs • 685 views
ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by alim10
0
gravatar for Bjoern Gruening
3.0 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi,

Imho MACS is not supported anymore and you should use MACS2 wherever possible. Can you try to 'repair' or uninstall/reinstall the repository?

Ciao,

Bjoern

ADD COMMENTlink written 3.0 years ago by Bjoern Gruening5.1k
0
gravatar for alim
3.0 years ago by
alim10
United Kingdom
alim10 wrote:

Hi Bjoern, 

Thank you very much for replying me. I have tried to uninstall and reinstall but it's the same. How would you suggest I repair it ? 

I have downloaded MACS2 but the adjustable parameters are different. For example, in MACS I could control the mFOLD parameter, but this option seem to be omitted from MACS2, and I am given the option to alter q-value instead. 

What are your experiences with ChIP-Seq analysis ?

Cheers,

Alfred 

 

 

 

 

ADD COMMENTlink written 3.0 years ago by alim10
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