Similar posts • Search »

• Stop deleted jobs
  Hey guys, I couldn´t find any solution for my problem: I queued up several jobs in my history fo...
• Closing window while there is a pending/running job
  If I close my galaxy window, internet browser, lose my internet connection, turn off my computer,...
• how to restart the local galaxy server without cancel the running jobs
  I set up a local galaxy server. And I am wondering that whether there is a way to restart the se...
• What is the average queue time for Bowtie2?
  Hi all, I have started a bowtie2 alignment (RNAseq, 100 bp paired end, two 15GB FASTQ files again...
• Cufflinks never start??
  I am still a newbie on Galaxy. I mapped my RNA-seq reads by TopHat without problem (I believe), ...
• An error occurred setting the metadata for this dataset
  Hi Galaxy Team, I've been using TopHat to map my reads and I've received the same error message ...
• tophat2 job canceled by administrator
  Hello  I am running Tophat2 analyses . Recently all my attempts failed . Jobs are systematically...
• [Tool Config] How to enforce cleanup tasks (shell commands) on job cancelation
  Hello, I have a tool which submits a custom pipeline shell script to our SGE. When a user cancel...
• Conversion of file format
  Hi there, I'm using galaxy.org and trying to convert two of my datasets from fastqsanger to fast...
• Can't change datatype
  Galaxy won't let me edit attributes even though fastq file is not in use. I'm trying to change to...
• Repeated jobs in history
  I've been working with galaxy online for a few years now without any problems. However, today I s...
• 'waiting to run'
  Hi, I have started a couple of lastz alignments on usegalaxy.org on sunday and since then, they ...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• What happens to users' jobs when I restart my local Galaxy instance?
  Hi everybody! I have a (possibly stupid) question about the behaviour of a local instance of Gal...
• Problem with data analysis in Galaxy Pipeline (very urgent)
  I've been using TopHat to map my reads and I've received the same error message for the "accepted...
• Galaxy Job Is Waiting To Run Forever
  Hello, I tried to upload some fasq data but the jobs never started running and I waited over 20 ...
• Are the Galaxy Main servers backed up at the moment?
  Hi, I have 20 small jobs running on the public Galaxy Main instance, all involving less than 100...
• slurmstepd error job exceeded memory limit (8034000 > 7864320) being killed
  hi, I'm posting this question because i didn't see a previous post about it (slurmstepd error, se...
• Persisting cron.hourly jobs with my Galaxy-docker-stable instance
  After some time I have quite many persisting cron.houly jobs taking substantial cpu usage, I do n...
• Every job is waiting to run
  I wanted to upload mu trimmed reads to galaxy and map them using bowtie, but the only task I was ...