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Question: Errors onStitch MAF blocks
0
gravatar for i19870503
3.4 years ago by
i19870503 • 0
Australia
i19870503 • 0 wrote:

I ran the stitch maf blocks wiht 7 species in 100way method, but after several minutes pop up the error message. There was nothing wrong when I run the same program with 29 mammals in 46way method. So is there any solution for that?
alignment • 792 views
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modified 3.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.4 years ago by i19870503 • 0
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gravatar for Jennifer Hillman Jackson
3.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

These jobs were running at http://usegalaxy.org?

The issue could be memory related. See if the error message matches on of those in section 2.8 of the Galaxy Support wiki:
https://wiki.galaxyproject.org/Support

If those are not a match, I would run the job one more time to eliminate a transient cluster issue, then if it fails again, send in more details about the error (including confirmation about the Galaxy server).

Best, Jen, Galaxy team
ADD COMMENT • link written 3.4 years ago by Jennifer Hillman Jackson ♦ 25k

1. I ran the jobs at http://usegalaxy.org

2.I also read the support document, but nothing help with that... what's more, I've run the job severval times recently, but also got the error message.

details for that:

185 Stitch MAF blocks on data 183

tool error

This job was terminated because it used more memory than it was allocated. Please click the bug icon to report this problem if you need help.

Name: Stitch MAF blocks on data 183
Created: Tue Jul 14 06:11:27 2015 (UTC)
Filesize: ??? bytes
Dbkey: susScr3
Format: fasta
Galaxy Tool ID: Interval_Maf_Merged_Fasta2
Galaxy Tool Version: 1.0.1
Tool Version: None
Tool Standard Output: stdout
Tool Standard Error: stderr
Tool Exit Code: None
API ID: bbd44e69cb8906b508dbfcfe74e20225
History ID: 9ae40094381d0a6a
UUID: bec70db7-1e65-4692-98f7-d5bf4bd72265

 

Input Parameter Value Note for rerun
Choose intervals 183: Convert genome coordinates on data 182 [ MAPPED COORDINATES ]  
MAF Source cached  
MAF Type 100_WAY_MULTIZ_v2_hg19  
Choose species hg19 mm10 susScr3 bosTau7  
Split into Gapless MAF blocks No

 

ADD REPLY • link written 3.4 years ago by i19870503 • 0
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